Single-molecule localization microscopy approach has higher precision

Sept. 10, 2019
A team of researchers has developed a new interferometric single-molecule localization microscopy method with fast modulated structured illumination.

Although various image-based central position estimation (centroid fitting) methods such as 2D Gaussian fitting methods have been commonly used in single-molecule localization microscopy (SMLM) to precisely determine the location of each fluorophore, it is still a challenge to improve the single-molecule lateral localization precision to molecular scale (<2 nm) for high-throughput nanostructure imaging.

Recognizing this, researchers at the Institute of Biophysics of the Chinese Academy of Sciences (Beijing, China) developed a new interferometric single-molecule localization microscopy with fast modulated structured illumination, called repetitive optical selective exposure (ROSE).

ROSE uses six different direction and phase interference fringes to excite the fluorescent molecules. The intensity of the fluorescent molecules is closely related to the phase of the interference fringes. A fluorescence molecule is located by the intensities of multiple excitation patterns of an interference fringe, providing around two-fold improvement in the localization precision. This technique has pushed the resolution of SMLM to <3 nm (~1 nm localization precision).

The researchers first designed three different lattice grids of DNA origami structures with 5, 10, and 20 nm point-to-point spacing to verify the performance of ROSE. Both conventional centroid fitting and ROSE could resolve the 20 nm structure at the same photon budget. ROSE could also clearly resolve the 10 nm distance, which could not be resolved by centroid fitting.

They demonstrated that ROSE could resolve a 5 nm structure at a resolution of ~3 nm over a large field of view of 25 × 25 μm2, which means that ROSE has the ability to push the resolving power of SMLM to the molecular scale.

In addition, using ROSE to analyze cellular nanostructures, the researchers showed that ROSE has advantages in resolving the hollow structure of single microtubule filaments, small clathrin-coated pits (CCPs) and cellular nanostructures of actin filament. The Fourier ring correlation (FRC) analysis indicated that ROSE improved final resolution by twofold compared with the centroid fitting method.

ROSE can be extended to 3D nanometer-scale imaging by introducing additional excitation patterns along the axial direction. The researchers envision that this method could extend the application of SMLM in biomacromolecule dynamic analysis and structural studies at the molecular scale.

Full details of the work appear in the journal Nature Methods.

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